Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1244442 | chr10:7850688 | G/A | 9.28E-6 | 487 | 15.15 | 16.2 | 16.18 | KM Plot |
| THCA | rs1244443 | chr10:7852242 | G/A | 5.65E-6 | 488 | 16.02 | 15.9 | 15.7 | KM Plot |
| THCA | rs1244445 | chr10:7852884 | C/T | 1.26E-6 | 479 | 15.67 | 16.63 | 18.12 | KM Plot |
| THCA | rs1244447 | chr10:7854441 | A/C | 5.65E-6 | 489 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244448 | chr10:7854814 | C/T | 5.65E-6 | 489 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244450 | chr10:7855055 | G/A | 5.65E-6 | 489 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244451 | chr10:7856648 | G/A | 5.65E-6 | 489 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244456 | chr10:7859107 | A/G | 5.91E-6 | 490 | 15.5 | 16.2 | 15.17 | KM Plot |
| THCA | rs1244457 | chr10:7859134 | C/T | 8.92E-9 | 488 | 15.13 | 17 | 16.28 | KM Plot |
| THCA | rs1244465 | chr10:7864907 | T/C | 5.73E-6 | 488 | 16.07 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244467 | chr10:7865083 | G/A | 5.84E-6 | 486 | 16.07 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244469 | chr10:7865885 | C/T | 3.83E-5 | 489 | 15.03 | 16.83 | 17.77 | KM Plot |
| THCA | rs1244472 | chr10:7866576 | A/T | 5.64E-6 | 490 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244474 | chr10:7867377 | G/A | 5.64E-6 | 490 | 16.02 | 15.9 | 15.5 | KM Plot |
| THCA | rs1244476 | chr10:7869748 | A/C | 4.99E-5 | 489 | 14.93 | 17.47 | 16.28 | KM Plot |